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Integrative-Transcriptomics / tss-prediction-comparison

This repository includes the tool for the prediction, comparison and visualization of TSS predicted using RNAseq. The results are then compared to provide an overview and also single-detailed visualizations.
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Comparing our TSS with TSSpredator's TSS results in 0 common TSS #69

Closed AronWichtner closed 1 week ago

AronWichtner commented 1 month ago

Comparing our TSS with TSSpredator's TSS results in 0 common TSS.

As discussed in the back end team this might be due to an issue in the prediction. The latest branch is branch 51.

mwittep commented 1 month ago

Just for clarification, only for datasets that were not included in the training, right?

Mathias Witte Paz PhD Student Integrative Transcriptomics Interfaculty Institute for Bioinformatics and Medical Informatics (IBMI) Sand 14 72076 Tübingen +49 (0)7071 – 29-70447

On 17. Jul 2024, at 16:19, AronW @.***> wrote:

Comparing our TSS with TSSpredator's TSS results in 0 common TSS.

As discussed in the back end team this might be due to an issue in the prediction.

— Reply to this email directly, view it on GitHub https://github.com/Integrative-Transcriptomics/tss-prediction-comparison/issues/69, or unsubscribe https://github.com/notifications/unsubscribe-auth/AHBAMLUJMGWJTKPU6TOWF4DZMZ4OVAVCNFSM6AAAAABLAXYL7CVHI2DSMVQWIX3LMV43ASLTON2WKOZSGQYTGNZVGAZTMMY. You are receiving this because you are subscribed to this thread.

AronWichtner commented 1 week ago

Bug was fixed by @Julian-Borbeck . There was a indexing problem in the prediction