search

Intel-HLS / GenomicsDB

GenomicsDB
Other
111 stars 28 forks source link

Default combination operation for DP INFO field produces different value #138

Closed jackgoldsmith4 closed 7 years ago

jackgoldsmith4 commented 7 years ago

On an earlier issue, you said that the default combination operation for the DP INFO field is "sum". When I specify the combination operation as "sum" in the vid JSON file, I get the correct DP value. However, when I don't specify any combination operation for the DP field, I get a value that is 100x the corresponding correct value in the VCF. This suggests that something could be wrong with the default combiner for DP.

jackgoldsmith4 commented 7 years ago

Closing this issue because it is similar to #136. The general issue now is how 'statistics' fields should be stored in genomicsDB.