Open samuel100 opened 7 years ago
To solve both errors outlined above I took the following steps....
sudo cp /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/
cp /usr/include/hdf5/openmpi/*.h /home/samkemp/.julia/v0.5/ParallelAccelerator/src/../deps/generated/
Thanks for posting your solutions @samuel100 . Installing MPI and HDF5 and making sure HPAT picks them up properly seems challenging in a portable way. Maybe we need CMake.
When running the logistic regression example, the model returns but there are also some errors:
It looks like hdf5.h cannot be found (I have added it to my PATH, but it still cannot find it). Also there appears to be something going awry in ParallelAccelerator.
When running on 2 processes, there is a segmentation fault (there should not be a memory issue here since I was looking at top when the process was running and I had plenty of spare memory. Error below