Open HenryYihengXu opened 2 years ago
Hello, I'm trying to compile LISA with the provided make file. It gives me cannot open source file "bwa.h" when I run make. Specifically, here is the error message:
cannot open source file "bwa.h"
icpc -DSAIS=1 -std=c++17 -xCORE-AVX512 -Ofast -fopenmp -Wall -Wshadow -Wno-char-subscripts -DOUTPUT -DNO_HUGE_PAGE -DNO_DNA_ORD -DREV_COMP -DBWA_MEM_BUG -DNOCHUNK -DVECTORIZE -DENABLE_PREFETCH -D_64BIT -I src/ -I ../ext/ -I ../ext/safestringlib/include/ benchmarks/bench-smem-lisa.cpp -lz -L./.. -ltal -L ../ext/safestringlib/ -lsafestring -DPRINT_OUTPUT -o smem-lisa.o In file included from src/qbwt-rmi-batched.h(31), from benchmarks/bench-smem-lisa.cpp(26): src/read.h(30): catastrophic error: cannot open source file "bwa.h" #include "bwa.h" ^ compilation aborted for benchmarks/bench-smem-lisa.cpp (code 4) make: *** [smem-lisa] Error 4
I didn't see bwa.h in the repo. Could you help me fix this issue? Thanks
bwa.h
Hello, I'm trying to compile LISA with the provided make file. It gives me
cannot open source file "bwa.h"
when I run make. Specifically, here is the error message:I didn't see
bwa.h
in the repo. Could you help me fix this issue? Thanks