Missing symbols - Githubissues

luk-f-a commented 3 years ago

hello!

I tried running the latest version of sdc and got this problem when importing:

/home/.../anaconda3/envs/sdc-env/bin/python /home/.../mypyprojects/test_intel_sdc/test.py
Traceback (most recent call last):
  File "/home/.../mypyprojects/test_intel_sdc/test.py", line 1, in <module>
    import sdc
  File "/home//anaconda3/envs/sdc-env/lib/python3.7/site-packages/sdc/__init__.py", line 38, in <module>
    import sdc.hiframes.boxing
  File "/home//anaconda3/envs/sdc-env/lib/python3.7/site-packages/sdc/hiframes/boxing.py", line 58, in <module>
    from sdc.extensions.indexes.range_index_ext import box_range_index, unbox_range_index
  File "/home//anaconda3/envs/sdc-env/lib/python3.7/site-packages/sdc/extensions/indexes/range_index_ext.py", line 41, in <module>
    from sdc.datatypes.common_functions import SDCLimitation, _sdc_take
  File "/home//anaconda3/envs/sdc-env/lib/python3.7/site-packages/sdc/datatypes/common_functions.py", line 48, in <module>
    from sdc.functions import numpy_like
  File "/home//anaconda3/envs/sdc-env/lib/python3.7/site-packages/sdc/functions/numpy_like.py", line 59, in <module>
    from sdc.functions.sort import parallel_sort, parallel_stable_sort, parallel_argsort, parallel_stable_argsort
  File "/home//anaconda3/envs/sdc-env/lib/python3.7/site-packages/sdc/functions/sort.py", line 36, in <module>
    from sdc import concurrent_sort
ImportError: //.../anaconda3/envs/sdc-env/lib/python3.7/site-packages/sdc/concurrent_sort.cpython-37m-x86_64-linux-gnu.so: undefined symbol: _ZN3tbb6detail2r114notify_waitersERNS0_2d112wait_contextE

This is linux mint 19.1 64bit, python 3.7.

This is the full environment, which was created fresh following the instructions in the readme:

Package list - Click to expand!

``` # Name Version Build Channel abseil-cpp 20200225.2 he1b5a44_2 conda-forge arrow-cpp 0.17.0 py37hc11a6a2_0 conda-forge aws-sdk-cpp 1.7.164 hba45d7a_2 conda-forge blas 1.0 mkl anaconda boost-cpp 1.72.0 h9d3c048_4 conda-forge brotli 1.0.9 he6710b0_2 anaconda bzip2 1.0.8 h7b6447c_0 anaconda c-ares 1.16.1 h7b6447c_0 anaconda ca-certificates 2020.10.14 0 anaconda certifi 2020.6.20 py37hefe589e_1 intel curl 7.71.1 hbc83047_1 anaconda gflags 2.2.2 he6710b0_0 anaconda glog 0.4.0 he6710b0_0 anaconda grpc-cpp 1.28.1 h8e748ff_2 conda-forge icc_rt 2020.3 intel_304 intel icu 68.1 h58526e2_0 conda-forge intel-openmp 2020.2 254 anaconda intelpython 2021.1.1 1 intel krb5 1.18.2 h173b8e3_0 anaconda ld_impl_linux-64 2.33.1 h53a641e_7 anaconda libcurl 7.71.1 h20c2e04_1 anaconda libedit 3.1.20191231 h14c3975_1 anaconda libevent 2.1.10 hcdb4288_3 conda-forge libffi 3.3 he6710b0_2 anaconda libgcc-ng 9.1.0 hdf63c60_0 anaconda libllvm10 10.0.1 hbcb73fb_5 libprotobuf 3.11.4 hd408876_0 anaconda libssh2 1.9.0 h1ba5d50_1 anaconda libstdcxx-ng 9.1.0 hdf63c60_0 anaconda libthrift 0.13.0 hbe8ec66_6 conda-forge llvmlite 0.34.0 py37h269e1b5_4 lz4-c 1.9.2 heb0550a_3 anaconda mkl 2019.4 243 anaconda mkl-service 2.3.0 py37he904b0f_0 anaconda mkl_fft 1.2.0 py37h23d657b_0 anaconda mkl_random 1.1.0 py37hd6b4f25_0 anaconda ncurses 6.2 he6710b0_1 anaconda numba 0.51.2 py37h35a63e4_0 intel numpy 1.19.1 py37hbc911f0_0 anaconda numpy-base 1.19.1 py37hfa32c7d_0 anaconda openssl 1.1.1h h14c3975_0 intel pandas 1.0.5 py37h0573a6f_0 anaconda parquet-cpp 1.5.1 2 conda-forge pip 20.2.4 py37_0 anaconda pyarrow 0.17.0 py37h110162e_0 conda-forge python 3.7.9 h7579374_0 anaconda python-dateutil 2.8.1 py_0 anaconda python_abi 3.7 1_cp37m conda-forge pytz 2020.1 py_0 anaconda re2 2019.08.01 he6710b0_0 anaconda readline 8.0 h7b6447c_0 anaconda sdc 0.36.0 py37he107479_0 intel/label/beta setuptools 50.3.0 py37hb0f4dca_1 anaconda six 1.15.0 py_0 anaconda snappy 1.1.8 he6710b0_0 anaconda sqlite 3.33.0 h62c20be_0 anaconda tbb 2021.1.1 intel_119 intel tbb4py 2021.1.1 py37_intel_119 intel thrift-compiler 0.13.0 hbe8ec66_6 conda-forge thrift-cpp 0.13.0 6 conda-forge tk 8.6.10 hbc83047_0 anaconda wheel 0.35.1 py_0 anaconda xz 5.2.5 h7b6447c_0 anaconda zlib 1.2.11 h7b6447c_3 anaconda zstd 1.4.5 h9ceee32_0 anaconda ```

Is this a problem with the TBB version? https://github.com/intel/llvm/issues/2774

AlexanderKalistratov commented 3 years ago

@luk-f-a thanks for reporting. It seems there was wrong label on conda channel, resulting older version of sdc (0.36) is downloading. At the moment labels are fixed and correct version (0.37) should be download.

Please check if it fixes your issue.

luk-f-a commented 3 years ago

hi @AlexanderKalistratov , thanks, problem solved!

IntelPython / sdc

Missing symbols #952