InvasionBiologyHypotheses / Documentation

Documentation related to building an open, zoomable atlas for invasion science and beyond
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Look into ontologies for hypotheses #12

Open Daniel-Mietchen opened 2 years ago

Daniel-Mietchen commented 2 years ago

e.g. as per https://disk-project.org/ontology/disk/index-en.html (DISK) and https://jbiomedsem.biomedcentral.com/articles/10.1186/2041-1480-2-S2-S3 (HyQue)

The latter had a web app but that seems to be defunct:

Daniel-Mietchen commented 2 years ago

Here is an example of DISK usage from the CrowdAlytics project, provided by @criscod:

@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . 
@prefix disk: <http://disk-project.org/ontology/disk#> . 
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> . 
@prefix crowdalytics: <http://ddis.ifi.uzh.ch/crowdalytics/> . 

<http://ddis.ifi.uzh.ch/crowdalytics/TLOI1> 
            rdf:type disk:TriggeredLineOfInquiry; 
            disk:hasHypothesis crowdalytics:H1; 
            disk:hasLineOfInquiry crowdalytics:LOI1 . 

<http://ddis.ifi.uzh.ch/crowdalytics/H1> 
            rdf:type disk:Hypothesis; 
            disk:dateCreated "date1"^^xsd:date; 
            disk:hasUsageNotes "userNotes1"^^xsd:string; 
            disk:hasAuthor crowdalytics:P1 . 

<http://ddis.ifi.uzh.ch/crowdalytics/P1> 
            rdf:type disk:Person; 
            disk:hasName "John Smith"^^xsd:string; 
            disk:hasEmail "smith@company.org"^^xsd:string . 

<http://ddis.ifi.uzh.ch/crowdalytics/LOI1> 
            rdf:type disk:LineOfInquiry; 
            disk:hasHypothesisQuery "Frequent red meat ingestion is related to heart disease."^^xsd:string; 
            disk:hasQuestion crowdalytics:Q1 . 

<http://ddis.ifi.uzh.ch/crowdalytics/Q1> 
            rdf:type disk:Question; 
            disk:hasQuestionTemplate "?i is related to ?d"^^xsd:string; 
            disk:hasQuestionVariable crowdalytics:QV1 ;
disk:hasQuestionVariable crowdalytics:QV2.

<http://ddis.ifi.uzh.ch/crowdalytics/QV1> 
            rdf:type disk:QuestionVariable; 
            disk:hasVariableName “?i"^^xsd:string . 

<http://ddis.ifi.uzh.ch/crowdalytics/QV2> 
            rdf:type disk:QuestionVariable; 
            disk:hasVariableName “?d"^^xsd:string . 
Daniel-Mietchen commented 2 years ago

Here are a few more pointers to ontologies that have hypothesis-related elements: https://bioportal.bioontology.org/search?utf8=%E2%9C%93&query=hypothesis&button=

Daniel-Mietchen commented 2 years ago

There is also the Argument Model Ontology.