Error: ValueError: Tried to convert 'shape' to a tensor and failed. Error: Cannot convert a partially known TensorShape (1, ?) to a Tensor

[Alarabi1980]

hello guys, can you help me with this error? I am not sure what to do? fit <- cellassign(

• exprs_obj = sce_marker[rownames(pbmc_marker_matrix),],
• marker_gene_info = pbmc_marker_matrix,
• s = sizeFactors(pbmc.1k.sce),
• shrinkage = TRUE,
• max_iter_adam = 50,
• min_delta = 2,
• verbose = TRUE) Error: ValueError: Tried to convert 'shape' to a tensor and failed. Error: Cannot convert a partially known TensorShape (1, ?) to a Tensor. In addition: Warning message: In cellassign(exprs_obj = sce_marker[rownames(pbmc_marker_matrix), : Cells with no mapping counts are present. You might want to filter these out prior to using cellassign.

R version 4.2.1 (2022-06-23 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 22621)

Matrix products: default

locale: [1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8
[3] LC_MONETARY=English_United States.utf8 LC_NUMERIC=C
[5] LC_TIME=English_United States.utf8

attached base packages: [1] stats4 stats graphics grDevices utils datasets methods
[8] base

other attached packages: [1] reticulate_1.28 DT_0.27
[3] R2HTML_2.3.3 rjson_0.2.21
[5] scales_1.2.1 Matrix_1.5-3
[7] SeuratObject_4.1.3 Seurat_4.3.0
[9] lubridate_1.9.2 forcats_1.0.0
[11] stringr_1.5.0 dplyr_1.1.0
[13] purrr_1.0.1 readr_2.1.4
[15] tidyr_1.3.0 tibble_3.1.8
[17] tidyverse_2.0.0 pheatmap_1.0.12
[19] celldex_1.8.0 SingleR_2.0.0
[21] cellassign_0.99.21 tensorflow_2.11.0
[23] DropletUtils_1.18.1 scran_1.26.2
[25] scater_1.26.1 ggplot2_3.4.1
[27] scuttle_1.8.4 SingleCellExperiment_1.20.0 [29] SummarizedExperiment_1.28.0 Biobase_2.58.0
[31] GenomicRanges_1.50.2 GenomeInfoDb_1.34.9
[33] IRanges_2.32.0 S4Vectors_0.36.2
[35] BiocGenerics_0.44.0 MatrixGenerics_1.10.0
[37] matrixStats_0.63.0

[Romhop]

Hi, I met the same error，have you solved the problem?

[chloelulu]

@Romhop @Alarabi1980 Have you solved this issue? I met the same error.