search

Irrationone / cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data
Other
191 stars 79 forks source link

Problem installing tensorflow-probability -- "no such option: --no-user" #104

Open pvo93 opened 10 months ago

pvo93 commented 10 months ago

I'm trying to install cellassign for a researcher I support at the Mayo Clinic. When I try to install tensorflow-probability, I get the error message that "--no-user" is not a valid option. This is R 4.2.2 on RHEL8 Linux. Thanks in advance for any suggestions.

tensorflow::install_tensorflow(extra_packages='tensorflow-probability', version = "2.1.0") Using virtual environment '/home/mayo/wa02042/.virtualenvs/r-reticulate' ...

  • /home/mayo/wa02042/.virtualenvs/r-reticulate/bin/python -m pip install --upgrade --no-user --ignore-installed 'tensorflow==2.1.0.*' tensorflow-probability

Usage:
/home/mayo/wa02042/.virtualenvs/r-reticulate/bin/python -m pip install [options] [package-index-options] ... /home/mayo/wa02042/.virtualenvs/r-reticulate/bin/python -m pip install [options] -r [package-index-options] ... /home/mayo/wa02042/.virtualenvs/r-reticulate/bin/python -m pip install [options] [-e] ... /home/mayo/wa02042/.virtualenvs/r-reticulate/bin/python -m pip install [options] [-e] ... /home/mayo/wa02042/.virtualenvs/r-reticulate/bin/python -m pip install [options] <archive url/path> ...

no such option: --no-user Error: Error installing package(s): "'tensorflow==2.1.0.*'", "tensorflow-probability"