Use sizeFactors from SingleCellExperiment

Irrationone / cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

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Open kieranrcampbell opened 5 years ago

kieranrcampbell commented 5 years ago

If s is NULL we can check sizeFactors(sce) before computing them ourselves, but should have warning as often people don't know what sits there

robertamezquita commented 5 years ago

Does this package support SingleCellExperiment objects currently?

kieranrcampbell commented 5 years ago

Hi @robertamezquita

Yes SingleCellExperiments are supported as the main input. Please see the vignette or simply look at the input format section in ?cellassign

Kieran

robertamezquita commented 5 years ago

Great! I just didn't see it in the README. Thanks!