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Irrationone / cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data
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Accept seurat as input #20

Open kieranrcampbell opened 5 years ago

kieranrcampbell commented 5 years ago

Accept seurat data types as input using the Convert function in seurat. Note that Seurat should only be a suggests rather than depends to avoid depending on too many libraries.

bug1303 commented 4 years ago

This would be a nice usability plus, which would possibly increase the user base. As long as this is not supported, is there anything wrong with using MySCE = as.SingleCellExperiment(MySeuratObject)?