Do something intelligent with non-present cell types

Irrationone / cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

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Closed kieranrcampbell closed 5 years ago

kieranrcampbell commented 5 years ago

If a user specifies a cell type but e.g.

<= 1 of the markers are expressed at all
All the expression is extremely low (e.g. avg 1 count per cell in those that its expressed)
etc

Then remove that cell type from the rho matrix

Irrationone commented 5 years ago

Should be largely resolved in PR #26