I originally wrote that if an SCE isn't provided and a user provides a count matrix then effectively it should be cell by gene, ie
t( counts( sce ) )
as input, out of a pedantic need that dim 1 should be samples (cells). However, this is probably over confusing and we should change it to just gene by cell (ie counts(sce) equiv)
I originally wrote that if an SCE isn't provided and a user provides a count matrix then effectively it should be cell by gene, ie
as input, out of a pedantic need that dim 1 should be samples (cells). However, this is probably over confusing and we should change it to just gene by cell (ie
counts(sce)
equiv)