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Irrationone / cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data
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number of threads #42

Closed chenlingantelope closed 4 years ago

chenlingantelope commented 4 years ago

Hi, I am running into another problem (I ran the last session interactively, but since I might do it more, I submitted my jobs through qsub this time) and got OpenBLAS : Program will terminate because you tried to start too many threads. Here is the complete error message. 475300.zen.millennium.berkeley.edu.ER.txt

Is there an option for limiting the number of parallele threads?

Thanks Chenling

kieranrcampbell commented 4 years ago

Looks like we need to add an option in cellassign to limit thread usage. Can be achieved via

https://stackoverflow.com/questions/38187808/how-can-i-run-tensorflow-on-one-single-core

Will put on to-do list