Open key1356 opened 4 years ago
Also I can not install it through conda:
(tf-cell) C:\Users\key>conda install -c conda-forge -c bioconda r-cellassign Collecting package metadata (current_repodata.json): done Solving environment: failed with current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed
PackagesNotFoundError: The following packages are not available from current channels:
Current channels:
To search for alternate channels that may provide the conda package you're looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
Okay this looks like the same issue we're having fun with over in #52 which I think is a windows-specific can't locate correct version of tensorflow as per here https://github.com/rstudio/tensorflow/issues/95
Can you post the output of
tensorflow::tf_config()
and
reticulate::py_config()
?
Thanks
Hi, I can not install cellassign in Rstudio. I even tried R console with the same errors happen. There are several errors that I do not know if they are separate or derive from the same problem.
1: All
2: CRAN packages only
3: None
4: Biobase (2.42.0 -> 2.44.0) [CRAN] 5: BiocGenerics (0.28.0 -> 0.30.0) [CRAN] 6: BiocParallel (1.16.6 -> 1.18.1) [CRAN] 7: edgeR (3.24.3 -> 3.26.8) [CRAN] 8: limma (3.38.3 -> 3.40.6) [CRAN] 9: matrixStats (0.54.0 -> 0.55.0) [CRAN] 10: lambda.r (1.2.3 -> 1.2.4 ) [CRAN] 11: RcppAnnoy (0.0.12 -> 0.0.13) [CRAN] 12: RcppHNSW (0.1.0 -> 0.2.0 ) [CRAN] 13: pkgconfig (2.0.2 -> 2.0.3 ) [CRAN] 14: digest (0.6.20 -> 0.6.21) [CRAN] 15: ellipsis (0.2.0.1 -> 0.3.0 ) [CRAN]
Enter one or more numbers, or an empty line to skip updates: 3 √ checking for file 'C:\Users\key\AppData\Local\Temp\RtmpgtITQJ\remotes2b401eec5abe\Irrationone-cellassign-dc8ee37/DESCRIPTION' ...
Installing package into ‘C:/Users/key/Documents/R/win-library/3.6’ (as ‘lib’ is unspecified)
cellprobs html
celltypes html
dot-onLoad html
example_TME_markers html
example_cellassign_fit html
example_rho html
example_sce html
extract_expression_matrix html
get_mle_cell_type html
holik_data html
inference_tensorflow html
initialize_X html
marker_list_to_mat html
mleparams html
print.cellassign html
simulate_cellassign html
building package indices installing vignettes testing if installed package can be loaded from temporary location ** arch - i386 Warning: multiple methods tables found for 'lengths' Warning: multiple methods tables found for 'lengths' Warning: multiple methods tables found for 'rowSums' Warning: multiple methods tables found for 'colSums' Warning: multiple methods tables found for 'rowMeans' Warning: multiple methods tables found for 'colMeans' Error: package or namespace load failed for 'cellassign': .onLoad failed in loadNamespace() for 'cellassign', details: call: initialize_python(required_module, use_environment) error: Your current architecture is 32bit however this version of Python is compiled for 64bit. Error: loading failed Execution halted arch - x64 Warning: multiple methods tables found for 'lengths' Warning: multiple methods tables found for 'lengths' Warning: multiple methods tables found for 'rowSums' Warning: multiple methods tables found for 'colSums' Warning: multiple methods tables found for 'rowMeans' Warning: multiple methods tables found for 'colMeans' ERROR: loading failed for 'i386'
When I install python 64bit, It complains alternatively about:
error: Your current architecture is 64bit however this version of Python is compiled for 32bit.
Also to confirm Tensorflow installation I tried:
I think it has something to do with Tensorflow detection.