identify cells negative for a certain marker

Irrationone / cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

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identify cells negative for a certain marker #76

Open aldojongejan opened 3 years ago

aldojongejan commented 3 years ago

Dear all,

Is it possible to use a markerset of genes that have to be expressed AND genes that are definitely not to be found expressed? i.e. negative for CD14 etc..

with kind regards, Aldo