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Irrationone / cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data
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conda package does not depend on python, tensorflow, tensorflow-probability #84

Open aksarkar opened 3 years ago

aksarkar commented 3 years ago

After running the fragment in the README 

conda install -c conda-forge -c bioconda r-cellassign

I expect that all required packages are installed. However, I need to additionally run

conda install -c conda-forge python=3.8 tensorflow-gpu=2.2 tensorflow-probability

to get all of the required packages.

It would be helpful to add these dependencies to the conda package. conda search reports that they are not there already

r-cellassign 0.99.2 r40_2                                                                                                                
-------------------------                                                                                                                
file name   : r-cellassign-0.99.2-r40_2.tar.bz2                                                                                          
name        : r-cellassign                                                                                                               
version     : 0.99.2                                                                                                                     
build       : r40_2                                                                                                                      
build number: 2                                                                                                                          
size        : 1.0 MB                                                                                                                     
license     : Apache-2.0                                                                                                                 
subdir      : noarch                                                                                                                     
url         : https://conda.anaconda.org/bioconda/noarch/r-cellassign-0.99.2-r40_2.tar.bz2                                               
md5         : fff79fe2fb64a7a9e612241675eba934                                                                                           
timestamp   : 2020-05-13 17:44:00 UTC                                                                                                    
dependencies:                                                                                                                            
  - bioconductor-genomeinfodbdata                                                                                                        
  - bioconductor-scran                                                                                                                   
  - bioconductor-summarizedexperiment                                                                                                    
  - r-base >=4.0,<4.1.0a0                                                                                                                
  - r-glue                                                                                                                               
  - r-tensorflow