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Isabella136 / AmrPlusPlus_SNP

GNU General Public License v3.0
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File "SNP_Verification.py", line 275 #32

Open erazzolini opened 3 weeks ago

erazzolini commented 3 weeks ago

Hello Isabella,

I'm writing to you because I have a few problems to install Amr++_SNP.

I mannaged to install in a python 3.12 version and didn't work because of pysam and a problem with wheel. Than, I create a new environment with python 3.6, everything worked well but when I tried to install Amr++_SNP I received the followed problem:

(p36) [emanuelr@sgi ~/AmrPlusPlus_SNP]$ python3 SNP_Verification.py File "SNP_Verification.py", line 275 with (open(config['FULL_FILE_NAMES']['NTYPE_OUTPUT'], "w") as outputN, ^ SyntaxError: invalid syntax

Do you know what wrong I did?

Isabella136 commented 3 weeks ago

Amr++_SNP is only compatible with python 3.9+