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J-81 / dp_tools

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Runsheet generation should raise an exception if two read files are found for single end dataset #19

Closed J-81 closed 1 year ago

J-81 commented 1 year ago

ID:

GLDS-313 is not prepared for data processing yet. FastQ files need concatenation. image

Root Issue:

This resulted in the runsheet correctly indicating single; however, both read1 and read2 paths were populated. Read2 column is ignored if single is provided.

Fix:

If Read2 path is not empty and paired_end == False, an exception should be raised.

J-81 commented 1 year ago

Fixed by: https://github.com/J-81/dp_tools/commit/f9962f882b36f6537bcca2ea5598cf79d8c191bb