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J-SNACKKB
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FLIP
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
Academic Free License v3.0
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how to benchmark a new PLM model
#26
wangjiaqi8710
opened
3 weeks ago
5
Add FASTA files for every dataset
#25
joaquimgomez
closed
1 year ago
0
Correct typo in README of meltome dataset
#24
zsewa
closed
1 year ago
0
Confusing results between the paper and supplementary information.
#23
Ieremie
opened
1 year ago
0
Fixing broken links
#22
SebieF
closed
1 year ago
0
Fix secondary structure
#21
joaquimgomez
closed
1 year ago
1
403 When Trying to Access Data
#20
zanussbaum
closed
1 year ago
1
Fix typos/errors & add information
#19
joaquimgomez
closed
1 year ago
0
Wrong deletion masking for AAV task?
#18
dlnp2
opened
2 years ago
1
Added means only option for embeddings of large datasets
#17
kevingreenman
closed
2 years ago
0
Connecting FLIP to bio-embeddings (using biotrainer)
#16
joaquimgomez
closed
2 years ago
3
Adding Secondary Structure (secondary_structure) split & Conservation (conservation) split
#15
joaquimgomez
closed
2 years ago
5
Adding Single Aminoacid Variant (SAV) splits
#14
joaquimgomez
closed
2 years ago
6
Adding Binding residues (Bind) splits
#13
joaquimgomez
closed
2 years ago
6
Fix relative file paths plus sequence_models and ESM dependency issues
#12
kevingreenman
closed
2 years ago
4
Adding Subcellular Localization (SCL) splits
#11
joaquimgomez
closed
2 years ago
4
Stability dataset clustering data loss
#10
franzigeiger
opened
2 years ago
3
fixed splits shorthand, added empty directory required for training
#9
kevingreenman
closed
2 years ago
0
No module named 'sequence_models'
#8
yutongo
opened
2 years ago
1
Meltome MMseqs2 split parameters
#7
fteufel
closed
2 years ago
1
Review iterations
#6
sacdallago
closed
2 years ago
0
Review iterations
#5
sacdallago
closed
2 years ago
0
finding the data
#4
barthelemymp
closed
2 years ago
1
Take out hard-coded paths
#3
yangkky
closed
2 years ago
0
Rename tasks to be consistent with paper
#2
yangkky
closed
2 years ago
0
Make installable
#1
yangkky
closed
2 years ago
0