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J535D165 / datahugger

One downloader for many scientific data and code repositories! DOI :open_hands: Data
https://J535D165.github.io/datahugger/
MIT License
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Support datasets from the BioImage archive #78

Open IgnacioHeredia opened 2 weeks ago

IgnacioHeredia commented 2 weeks ago

Hi @J535D165 ,

I'm trying to download a dataset from the Bioimage archive, for example this one. But it raises a non-supported error:

❯ datahugger 10.6019/S-BIAD1232 test-bioimage                                           
Error: Data protocol for 10.6019/S-BIAD1232 not found.

Do you think this is a data repository that needs to be supported?
Please request support in the issue tracker:

    https://github.com/J535D165/datahugger/issues/new/choose

However, it looks that the Bioimage Archive is actually integrated in the Dataverse, which is in turn supported by Datahugger. So my questions really is: how can I download a dataset from a Dataverse-supported repository?

Thanks. :)

micafer commented 1 week ago

Hi @IgnacioHeredia, I think that this repository is not part of the Dataverse installations: https://dataverse.org/installations

IgnacioHeredia commented 1 week ago

Hi @micafer ,

I'm not familiar with how Dataverse works. Reading the Datahugger docs I see:

See https://dataverse.org/institutions and DataVerse on Re3data.org for an overview of DataVerse repositories.

So as the repository exists en re3data I assumed it could be used as is with Datahugger. Is this not the case?

J535D165 commented 1 week ago

It looks like they aren't using dataverse.

I can see a custom REST API for BioImage (see JSON button). I, or anyone else, can explore that. Rest of it looks straightforward to support.

IgnacioHeredia commented 1 week ago

Hi @J535D165 , it would be great if the Bioimage archive could be supported! 🚀 BTW thanks for the tool. :)