RNA-seq data analysis - Githubissues

JBerthelier / PiRATE

PiRATE (Pipeline to Retrieve and Annotate Transposable Elements)

http://doi.org/10.17882/51795

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Closed Lukanyo12 closed 4 years ago

Lukanyo12 commented 4 years ago

Hello @ Jérémy Berthelier Is it possible to just directly map potentially autonomous TEs with RNA-seq data, without mapping to genome assembly?

JBerthelier commented 4 years ago

Dear Lukanyo12, You can probably map potential autonomous TEs on a transcriptome assembly (I have never tried).