[INSTALL]: NEPTUNE stand-alone on narwhal

areinecke commented 3 weeks ago

Package name

neptune stand alone

Package version/tag

1.5

Build options

current

Installation timeframe

as soon as possible

Other information

N/A

WCOSS2

[ ] Check this box if and only if your package should be installed on WCOSS2 Cactus and Dogwood (all spack-stack packages will be installed on Acorn). If not, you may disregard the rest of the items below and submit this request.

WCOSS2: General questions

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WCOSS2: Installation and testing

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WCOSS2: Technical & security review list

[ ] The code is mature, stable, and production ready
[ ] The code is does not and cannot use the internet, and does not contain URLs (http, https, ftp, etc.) except in comments
[ ] The package does not contain prebuilt binary files that have not been approved by NCO security review
[ ] The code has no publicly disclosed cybersecurity vulnerabilities and exposures (search https://cve.mitre.org/cve/)
[ ] The code is not prohibited by DHS, DOC, NOAA, or NWS
[ ] The code comes from a trusted source. Trusted sources include other NWS, NOAA, or DOC, agencies, or other Federal agencies that operate at a FISMA high or equivalent level. Additionally, trusted sources could be third-party agencies through which there is an existing SLA on file (such as RedHat).
[ ] The code is actively maintained and supported (it continues to get updates, patches, etc.)
[ ] The code is not maintained by a private entity operating in a foreign country (if it is, make a note below)
[ ] There is sufficient documentation to support maintenance
[ ] There are no known security vulnerabilities or weaknesses
[ ] Installing and running the code does not require privileged processes/users
[ ] There are no software dependencies that are unapproved or have security concerns (if there are, make a note below)
[ ] There are no concerns related to SA, SI, and SC NIST control families

WCOSS2: Additional comments

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climbfuji commented 3 weeks ago

Working on this now

climbfuji commented 3 weeks ago

@areinecke I built the standalone env on Narwhal with Intel (same commit hash as on Nautilus). I compiled neptune_atmos with it (making the necessary sp -> ip changes).

umask 0022
module unload PrgEnv-cray
module load PrgEnv-intel/8.3.2
module unload intel
module load intel-classic/2021.4.0
module unload cray-mpich
module load cray-mpich/8.1.14
module unload cray-python
module load cray-python/3.9.7.1
module unload cray-libsci
module load cray-libsci/22.08.1.1

module use /p/app/projects/NEPTUNE/spack-stack/spack-stack-dev-20240523-neptune-env/envs/ne-intel-2021.4.0/install/modulefiles/Core
module load stack-intel/2021.4.0
module load stack-cray-mpich/8.1.14
module load stack-python/3.10.13
module load neptune-env/1.4.0

I did see an odd warning or two about libz, because the standalone env comes with zlib-ng and both are shared libraries. I think it is ok for now, but going forward we either want to revert to zlib (possible performance hit when using compression), or build zlib-ng static only.

areinecke commented 3 weeks ago

@areinecke I built the standalone env on Narwhal with Intel (same commit hash as on Nautilus). I compiled neptune_atmos with it (making the necessary sp -> ip changes).
umask 0022
module unload PrgEnv-cray
module load PrgEnv-intel/8.3.2
module unload intel
module load intel-classic/2021.4.0
module unload cray-mpich
module load cray-mpich/8.1.14
module unload cray-python
module load cray-python/3.9.7.1
module unload cray-libsci
module load cray-libsci/22.08.1.1

module use /p/app/projects/NEPTUNE/spack-stack/spack-stack-dev-20240523-neptune-env/envs/ne-intel-2021.4.0/install/modulefiles/Core
module load stack-intel/2021.4.0
module load stack-cray-mpich/8.1.14
module load stack-python/3.10.13
module load neptune-env/1.4.0
I did see an odd warning or two about libz, because the standalone env comes with zlib-ng and both are shared libraries. I think it is ok for now, but going forward we either want to revert to zlib (possible performance hit when using compression), or build zlib-ng static only.

Thanks, Dom. I test it out.

areinecke commented 3 weeks ago

I tested this on narwhal and it worked as expected.

climbfuji commented 3 weeks ago

Thanks for the quick turnaround! Closing.

JCSDA / spack-stack