JCVenterInstitute / NSForest

A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing
MIT License
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ipynb/Tutorial.ipynb #20

Open adeslatt opened 3 weeks ago

adeslatt commented 3 weeks ago

Thank you for your tool -- I thought I would go ahead and make a jupyter lab notebook of your tutorial. This pull request is updating your repository with the rendered jupyter lab notebook from the readthedocs. It matches completely. I ran the jupyter lab notebook from with a controlled conda environment, in my environment the only thing that was missing was the scanpy library. I installed it using anaconda forge so I installed all my dependencies rather than with pip with conda.

 conda install conda-forge::scanpy

@BeverlyPeng