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JCVenterInstitute / VIGOR4

VIGOR4
GNU General Public License v3.0
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cat tmp_align_fasta.aln" (Error Number: "256" - Child error message: "") #20

Closed Beuret closed 3 years ago

Beuret commented 4 years ago

Performing an analysis using VIGOR3 and the bunya db, i got following error:

Problems executing the following command: "cat tmp_align_fasta.aln" (Error Number: "256" - Child error message: "")

How can i troubleshoot?

Many thanks and cheers Christian

jchriste-jcvi commented 4 years ago

Hi Christian,

I suspect that the temporary alignment file wasn't produced by clustalw. In prod3/VIGOR.pm I would take a look at the output from clustalw by adding a line like:

print cat $vigorspace/tmp_align_fasta.log, "\n";

just after it runs clustalw with

&runCmd($vigorspace, $cmd);

I hope that helps,

James

jchriste-jcvi commented 3 years ago

This is a Vigor3 issue, so closing.