JCVenterInstitute / VIGOR4

VIGOR4
GNU General Public License v3.0
17 stars 11 forks source link

SARS-CoV-2 protein name abbreviations #30

Open yzhang2168 opened 2 years ago

yzhang2168 commented 2 years ago

Some of the ViPR Locus IDs are too long for visualization tools. Please output an additional field for abbreviated names and store them in the ViPR Locus ID field. The suggested abbreviations are in the table below.

<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:x="urn:schemas-microsoft-com:office:excel" xmlns="http://www.w3.org/TR/REC-html40">

Protein Product Name | ViPR Locus ID -- | -- ORF1a polyprotein | ORF1a ORF1ab polyprotein | ORF1ab leader protein | nsp1 nsp2 | nsp2 nsp3 | PLpro nsp4 | nsp4 3C-like proteinase | 3CL nsp6 | nsp6 nsp7 | nsp7 nsp8 | nsp8 nsp9 | nsp9 nsp10 | nsp10 nsp11 | nsp11 RNA-dependent RNA polymerase | RdRP helicase | Hel 3'-to-5' exonuclease | nsp14 endoRNAse | nsp15 2'-O-ribose methyltransferase | nsp16 surface glycoprotein | S ORF3a protein | ORF3a envelope protein | E membrane glycoprotein | M ORF6 protein | ORF6 ORF7a protein | ORF7a ORF7b protein | ORF7b ORF8 protein | ORF8 nucleocapsid phosphoprotein | N ORF10 protein | ORF10