updated data download, aded conda yml and updated README

JDACS4C-IMPROVE / DrugCell

A visible neural network model for drug response prediction

MIT License

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updated data download, aded conda yml and updated README #42

Closed rohandavidg closed 10 months ago

rohandavidg commented 11 months ago

Updated the README to have instructions for running DrugCell in a container/ conda and pip

RylieWeaver commented 11 months ago

I got this error when trying to run after using the feature/early_stop .yml file to make the environment:

ModuleNotFoundError: No module named 'torchmetrics'

Are you sure you want to take it out?

RylieWeaver commented 11 months ago

This is fixed when I do your recommended steps. Probably this one in particular:

python3 -m pip install torch==1.12.1+cu113 torchvision==0.13.1+cu113 torchaudio==0.12.1 torchmetrics==0.11.1 --extra-index-url https://download.pytorch.org/whl/cu113

Maybe make it a required step?

rohandavidg commented 11 months ago

torchmetrics metrics shouldnt be in .yml file