I was trying the 'getting started' tutorial for your HoneyBADGER package, but I am running into an error after retesting the CNVs identified by the allele-based approach. Initially, HoneyBADGER identifies the following CNV boundaries:
When I retest these CNVs I get two warnings, which I think might result from the fact that I get different putative CNV regions than the ones listed in the tutorial:
If I then run the `summarizeResults command I get the following error:
I already tried to fix the error by setting min.num.cells in the hb$summarizeResults function to 0 as you suggested in one of the previous issues, but this doesn't seem to work...
Dear prof. Fan,
I was trying the 'getting started' tutorial for your HoneyBADGER package, but I am running into an error after retesting the CNVs identified by the allele-based approach. Initially, HoneyBADGER identifies the following CNV boundaries:
When I retest these CNVs I get two warnings, which I think might result from the fact that I get different putative CNV regions than the ones listed in the tutorial:
If I then run the `summarizeResults command I get the following error:
I already tried to fix the error by setting
min.num.cellsin thehb$summarizeResultsfunction to 0 as you suggested in one of the previous issues, but this doesn't seem to work...Thanks a lot for your time!!
Here's my session info:
