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JEFworks-Lab / HoneyBADGER

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
http://jef.works/HoneyBADGER/
GNU General Public License v3.0
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Seurat and Honeybadger are not compatible #6

Closed saeedsaberi closed 6 years ago

saeedsaberi commented 6 years ago

There is a compatibility issue here since you need R<3.4 for rjags in Honeybadger and R>3.4 for Seurat. This is making using this package hard for me. Any solution?

JEFworks commented 6 years ago

I am using R v3.4.1 with rjags. You may need to install the latest version of rjags or JAGS. I am on rjags v4-6 and JAGS v4.2.0.

Jean Fan NSF GRFP | Bioinformatics and Integrative Genomics PhD Candidate Kharchenko Lab | Department of Biomedical Informatics | Harvard University mail: 10 Shattuck St #3, Countway 336B, Boston, MA 02115 web: jef.workshttp://jefworks.com/

On Nov 30, 2017, at 2:22 PM, saeedsaberi notifications@github.com<mailto:notifications@github.com> wrote:

There is a compatibility issue here since you need R<3.4 for rjags in Honeybadger and R>3.4 for Seurat. This is making using this package hard for me. Any solution?

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saeedsaberi commented 6 years ago

yeah but your R is <3.4. I think this is making issues. Seurat explicitly needs R> 3.4.