JEFworks-Lab / STalign

Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
https://jef.works/STalign/
GNU General Public License v3.0
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Align DAPI to blue channel of H&E #25

Open ViriatoII opened 9 months ago

ViriatoII commented 9 months ago

Hi,

As described in the title, is it possible to align a DAPI 2D raster image to the blue channel of H&E?

I'm working on a pipeline that already discards the other 2 channels of the H&E.

I see your code always works with RGB H&E images, and you even force the source image to be a 3x vstack. Using both inputs as 2D images would also reduce computation time and resources.

Kind regards, Ricardo