Closed slowkow closed 4 years ago
Sorry, I think I made a mistake. I just tried it again after removing sva and MUDAN, and I get a new error after my pull request:
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
there is no package called ‘sva’
Calls: <Anonymous> ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
I can work around this by installing sva manually with:
BiocManager::install("sva")
After searching around, I re-discovered this gem:
https://github.com/r-lib/devtools/issues/700#issuecomment-235127291
Unfortunately, even after I added biocViews:
to the DESCRIPTION file and I still get an error:
ERROR: dependency ‘sva’ is not available for package ‘MUDAN’
Addressed via pull #9
I tried to install MUDAN and got:
This pull request eliminates the installation error that I ran into.
This page shows how we can use
Remotes:
to install from Bioconductor, GitHub, GitLab, or other sources:https://cran.r-project.org/web/packages/devtools/vignettes/dependencies.html