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JEFworks / ubit2

User-friendly Bioinformatics Tools
http://pklab.med.harvard.edu/jean/ubit2/index.html
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Separate index generation necessary? #22

Open JEFworks opened 8 years ago

JEFworks commented 8 years ago

Is separate index generation per fastq necessary? Or can we just assume all fastqs in the same alignment set can use the same indices?

dfan commented 7 years ago

I just copied what Browser Genome did although it's true they might not have worried about efficiency