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JEFworks
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ubit2
User-friendly Bioinformatics Tools
http://pklab.med.harvard.edu/jean/ubit2/index.html
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TODO
#3
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JEFworks
opened
8 years ago
JEFworks
commented
8 years ago
[x] GSEA tool tip to show genes on hover
[x] GSEA nicer GO names
[x] Allow each module to be recomputed individually
[x] Allow sorting by p-value
[ ] For large datasets, show top X genes by p-value, or by absolute fold change
[ ] Barplot of gene variance
[ ] For large datasets, show top X cells by filtering out low library size, or library complexity
[x] Draw significance lines for p-value barplot, correspond by coloring on volcano plot
[x] Color barplots
[x] Similarly draw threshold line for fold-change barplot, correspond by coloring on volcano plot
[ ] Switch to cut-tree instead of using k-means
[ ] Show group label in heatmap with row colors
[x] Move options to panel drop-down
[ ] Outlier/failure detection for samples based on lib size and complexity distributions
[x] Google analytics
[ ] Link tooltips
[x] Movable panels?
[ ] Export data subset
[x] Export svg as image
JEFworks
commented
8 years ago
[ ] allow row annotations
[ ] allow column annotations
[ ] heatmap color reverse?
[ ] drag to make panel heights bigger
[ ] panel zoom?
[x] transpose data
[x] Loading icon