Open divyavani01 opened 9 months ago
Lucky-Stark-01
commented
9 months ago Yeah, I'm also facing similar problem. I couldn't find the pocket graph .bin files after preprocessing the protein file. protein_graphtrain, = load_graphs('data/' + dataset + '/processed' + '/pocket_graph/' + str(id) + '.bin')
ravivarmapatturi
commented
9 months ago how to generate pocket_graph bin files ?? I'm facing issue while running protein_process.py file .
protein_graphtrain, = load_graphs('data/' + dataset + '/processed' + '/pocket_graph/' + str(id) + '.bin')
JK-Liu7
commented
6 months ago Thank you for your interest in our work. The generated ‘pocket_graph’ file has been uploaded.
divyavani01
commented
4 months ago ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (19964,) + inhomogeneous I got above error while running protein_process.py @JK-Liu7 how to resolve above issue.
while running protein_process.py, I am facing an issue inside the Protein_graph_process(dataset, fold, dir_output, id_train, id_test) function. I did not find any code which helps to generate pocket_graphs. can someone help me out to know how are the pocket_graphs generated.......in the file protein_process.py the code is loading pocket graphs and at the below pasted line i am facing error.
protein_graphtrain, = load_graphs('data/' + dataset + '/processed' + '/pocket_graph/' + str(id) + '.bin')