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JLSteenwyk / ClipKIT

a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
https://jlsteenwyk.com/ClipKIT/
MIT License
61 stars 4 forks source link

Preserve sequence description for FASTA #20

Closed edgardomortiz closed 2 years ago

edgardomortiz commented 2 years ago

I wonder if there is an option to preserve the sequence description for FASTA alignments? We store important info about the sample in the description but they are stripped by ClipKIT. I could write code to re-attach the descriptions from the original alignments but it would be ideal if ClipKIT could leave the descriptions untouched.

Thanks for the very useful software,

Edgardo

JLSteenwyk commented 2 years ago

Hi Edgardo,

Thank you for your constructive suggestion.

As of version 1.3.0, the entire sequence description is maintained in the ClipKIT output. Version 1.3.0 is now available via GitHub, PyPi, and the Anaconda cloud.

Thank you for using ClipKIT. You may also find some of our other software useful for your research needs; for example, PhyKIT is a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data and orthofisher automates the identification of a predetermined set of putative orthologous genes.

Happy holidays!!

All the best,

Jacob L. Steenwyk

edgardomortiz commented 2 years ago

Awesome! Thank you very much

Happy holidays as well

Edgardo