Numpy performance improvements

JLSteenwyk / ClipKIT

a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference

https://jlsteenwyk.com/ClipKIT/

MIT License

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Closed TJBIII closed 1 year ago

TJBIII commented 1 year ago

Closes #36

This PR includes a refactor of the MSA class to use numpy for performance improvements based on #36