[FEAT] Protein AccNum mapping

JRaviLab / MolEvolvR

An R Package for characterizing proteins using molecular evolution and phylogeny

https://jravilab.github.io/MolEvolvR/

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[FEAT] Protein AccNum mapping #109

Open Klangina opened 4 weeks ago

Klangina commented 4 weeks ago

Discussed in https://github.com/JRaviLab/MolEvolvR/discussions/24

^{Originally posted by **jananiravi** July 14, 2024} - [ ] from UniProt to NCBI | `up2ncbi` - [ ] NCBI to UniProt | `ncbi2up` - [ ] Protein to IPG | `acc2ipg` @jananiravi

Klangina commented 4 weeks ago

@jananiravi @epbrenner : Is it okay if I use the following package?

jananiravi commented 4 weeks ago

Potentially yes, but make sure it will work for all species mapping, not just human (Hs). rentrez might be a good package to start with, but I'm sure there are others too that connect ncbi and uniprot. @epbrenner have you used this one?

Klangina commented 4 weeks ago

I have created a PR with HS genes yesterday. I will look into rentrez and create another pr for that. Any issues/cons of rentrez that's there from the top of your mind? @jananiravi @epbrenner