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JRaviLab / MolEvolvR

An R Package for characterizing proteins using molecular evolution and phylogeny
https://jravilab.github.io/MolEvolvR/
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🐞[BUG] MolEvolvR dep: phangorn::read.aa() #16

Closed the-mayer closed 2 months ago

the-mayer commented 2 months ago

Describe the bug

MolEvolvR dependency, phangorn v2.12.1 no longer exports the read.aa() function

To Reproduce

Initiate pkgdown build from GHA

Expected behavior

pkgdown build succeeds, publishes new version of site. Instead, the following error is recieved:

Error: Error: object ‘read.aa’ is not exported by 'namespace:phangorn'

System Information

os: Ubuntu 22.04.5 LTS r_version: R version 4.4.1 (2024-06-14) platform: x86_64-pc-linux-gnu

Additional context

This can be reproduced locally in the following way:

  1. Clone MolEvolvR: git clone https://github.com/JRaviLab/MolEvolvR.git
  2. R: devtools::document()

    tree.R:119: @importFrom Excluding unknown export from phangorn: read.aa.