The latest version of the phangorn package no longer exports read.aa(), a function MolEvolvR utilized. The functionality of read.aa() has been present in read.phyDat() for some time, using the type = "AA" argument. This PR updates MolEvolvR to use read.phyDat() and fixes #16
What kind of change(s) are included?
[ ] Feature (adds or updates new capabilities)
[x] Bug fix (fixes an issue).
[ ] Enhancement (adds functionality).
[ ] Breaking change (these changes would cause existing functionality to not work as expected).
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Description
The latest version of the phangorn package no longer exports
read.aa()
, a function MolEvolvR utilized. The functionality ofread.aa()
has been present inread.phyDat()
for some time, using the type = "AA" argument. This PR updates MolEvolvR to useread.phyDat()
and fixes #16What kind of change(s) are included?
Checklist
Please ensure that all boxes are checked before indicating that this pull request is ready for review.