JRaviLab / MolEvolvR

An R Package for characterizing proteins using molecular evolution and phylogeny
https://jravilab.github.io/MolEvolvR/
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fixes #16 #17

Closed the-mayer closed 2 months ago

the-mayer commented 2 months ago

Description

The latest version of the phangorn package no longer exports read.aa(), a function MolEvolvR utilized. The functionality of read.aa() has been present in read.phyDat() for some time, using the type = "AA" argument. This PR updates MolEvolvR to use read.phyDat() and fixes #16

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the-mayer commented 2 months ago

Thanks @epbrenner for the review and the additional attention to these functions! Merging for now to get pkgdown builds back up and running :thumbsup: