[FEAT] Add error handling for functions

[Seyi007]

Requirements

• Ensure that all inputs are validated before processing. If inputs are invalid, return a user-friendly error message.
• Implement try-catch blocks where appropriate to handle exceptions gracefully without crashing the application.
• Update the documentation to include information about the new error-handling behavior

Acceptance Criteria

• [ ] All inputs are validated, and error messages are clear and informative.
• [ ] Exceptions are caught and logged appropriately without crashing the application.
• [ ] Documentation is updated to reflect the changes made.

[Seyi007]

Hi @jananiravi, issues #29 and this has been created as requested.

[Klangina]

@jananiravi can I kindly be assigned this task?

[jananiravi]

Sure! Can you post a note about which files/functions you're starting with so that others can contribute in parallel, too? Thanks!

[Seyi007]

Hi @Klangina, I'm creating the error handling mechanism on the R/acc2lin.R file. However, if you have started working on this, please leave a message so I can work on a different file.

[Seyi007]

Error handling is done for the R/acc2lin.R file. What files are you working on @Klangina?

[Seyi007]

Error handling and function names update is done for R/assign_job_queue.R file @jananiravi

[Seyi007]

Hi @awasyn, kindly drop updates on the files you're working on to avoid duplicating the same thing.

[awasyn]

Hey @Seyi007 . I added input checks for tree, summarize, reverse_operons and pre-msa-tree. I am currently working on unit tests since it has less action and is isolated. I have dependent PRs for fa2domain, cleanup.

[Seyi007]

Okay @awasyn , well done! I'm currently working on the error handling for R/blastWrappers.R @Klangina

[Seyi007]

Error handling for functions in R/blastWrappers.R is done, with pr #76 @jananiravi @the-mayer