Rename the listed function names in the following files.

[Seyi007]

          [R/combine_analysis.R](https://github.com/JRaviLab/MolEvolvR/blob/main/R/combine_analysis.R)

Original	Modified	User Facing
combine_full	combineFullAnalysis	✅
combine_ipr	combineIPR	✅

R/combine_analysis.R	Original	Modified	User Facing
combine_files	combineFiles	✅

R/create_lineage_lookup.R	Original	Modified	User Facing
create_lineage_lookup	createLineageLookup	✅
shorten_NA	shortenNA	❌

Originally posted by @the-mayer in https://github.com/JRaviLab/MolEvolvR/issues/7#issuecomment-2395119886

All updates should follow this format:	Original	Modified	User Facing
original_function	newFunction	✅

NOTE: Before beginning to work on a particular file, please check to see that @jananiravi has given the 👍 on the comment.

Please follow the contributing guidelines and create a new branch containing your changes. Commit your work, and submit a PR when ready for review.

Additionally, use the search in all files functionality in VS code, Rstudio, or any other text editor, and list all files the function is being called or used to be updated later.

[Seyi007]

Task done!

R/combine_analysis.R

                   files found:

combine_full | Namespace, .Rd(auto-gen) combine_ipr | Namespace, .Rd

R/combine_files.R combine_files | Namespace, combine_analysis.R, .Rd

R/create_lineage_lookup.R create_lineage_lookup | Namespace, GCA2lin.Rd, ipg2lin.Rd, acc2lin.R, lineage.R shorten_NA | none (internal facing), prefixed with "."

[jananiravi]

@rlesiyon, please check how your createLineageLookup does compared to this function, please?

[Seyi007]

Hi @jananiravi , this task has been done as stated earlier, It was included in my recent pull request.

[the-mayer]

@Seyi007, I'm not seeing a PR for this. Could you please confirm that the PR was created or link the PR to this issue? Thank you!

[Seyi007]

I included it in the error handling functionality in the PR #76 @the-mayer