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JRaviLab / MolEvolvR

An R Package for characterizing proteins using molecular evolution and phylogeny
https://jravilab.github.io/MolEvolvR/
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Replace the function names in R/fa2domain.R #45

Closed Seyi007 closed 1 month ago

Seyi007 commented 1 month ago 
          [R/fa2domain.R](https://github.com/JRaviLab/MolEvolvR/blob/main/R/fa2domain.R)
Original Modified User Facing
exec_interproscan runIPRScan
get_df_ipr_col_names getIPRScanColNames
get_df_ipr_col_types getIPRScanColTypes
read_iprscan_tsv readIPRScanTSV
make_df_iprscan_domains createIPRScanDomainTable
df_iprscan_domains2fasta convertIPRScanDomainTable2FA
fasta2fasta_domain getDomainsFromFA

Originally posted by @the-mayer in https://github.com/JRaviLab/MolEvolvR/issues/7#issuecomment-2395120455

All updates should follow this format: Original Modified User Facing
original_function newFunction ✅

NOTE: Before beginning to work on a particular file, please check to see that @jananiravi has given the 👍 on the comment.

Please follow the contributing guidelines and create a new branch containing your changes. Commit your work, and submit a PR when ready for review.

Additionally, use the search in all files functionality in VS code, Rstudio, or any other text editor, and list all files the function is being called or used to be updated later.

jananiravi commented 1 month ago

made minor modifications in Seyi's text above. Please check against names in #7. @Seyi007 @teddyCodex. e.g., interproscan --> IPRscan, and a few other fixes.