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JRaviLab / MolEvolvR

An R Package for characterizing proteins using molecular evolution and phylogeny
https://jravilab.github.io/MolEvolvR/
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Replace the function names in R/plotting.R #51

Closed Seyi007 closed 1 month ago

Seyi007 commented 1 month ago 
          [R/plotting.R](https://github.com/JRaviLab/MolEvolvR/blob/main/R/plotting.R)
Original Modified User Facing
shorten_lineage shortenLineage
upset.plot plotUpSet
lineage.DA.plot plotLineageDA
lineage.Query.plot plotLineageQuery
lineage.neighbors.plot plotLineageNeighbors
lineage.domain_repeats.plot plotLineageDomainRepeats
LineagePlot plotLineageHeatmap
LevelReduction .LevelReduction
GetKingdom .GetKingdom
stacked_lin_plot plotStackedLineage
Wordcloud3 plotWordcloud3
wordcloud_element createWordCloudElement
wordcloud2_element createWordCloud2Element
lineage_sunburst plotLineageSunburst
lineage.plot* plotLineage

Originally posted by @the-mayer in https://github.com/JRaviLab/MolEvolvR/issues/7#issuecomment-2395216713

All updates should follow this format: Original Modified User Facing
original_function newFunction ✅

NOTE: Before beginning to work on a particular file, please check to see that @jananiravi has given the 👍 on the comment.

Please follow the contributing guidelines and create a new branch containing your changes. Commit your work, and submit a PR when ready for review.

Additionally, use the search in all files functionality in VS code, Rstudio, or any other text editor, and list all files the function is being called or used to be updated later.

jananiravi commented 1 month ago

made minor modifications. good to go.