search

JRaviLab / MolEvolvR

An R Package for characterizing proteins using molecular evolution and phylogeny
https://jravilab.github.io/MolEvolvR/
Other
6 stars 16 forks source link

Replace the function names in R/summarize.R #53

Closed Seyi007 closed 1 month ago

Seyi007 commented 1 month ago 
          [R/summarize.R](https://github.com/JRaviLab/MolEvolvR/blob/main/R/summarize.R)
Original Modified User Facing
filter_by_doms filterByDomains
count_bycol countByColumn
elements2words elements2Words
find_paralogs findParalogs
words2wc words2WordCounts
filter_freq filterByFrequency
summarize_bylin summarizeByLineage
summ.DA.byLin summarizeDomainArch_ByLineage
summ.DA summarizeDomainArch
summ.GC.byDALin summarizeGenomicContext_ByDomainArchAndLineage
summ.GC.byLin summarizeGenomicContext_ByLineage
summ.GC summarizeGenomicContext
total_counts totalGenomicOrDomainArchitectureCounts

Originally posted by @the-mayer in https://github.com/JRaviLab/MolEvolvR/issues/7#issuecomment-2395219549

All updates should follow this format: Original Modified User Facing
original_function newFunction ✅

NOTE: Before beginning to work on a particular file, please check to see that @jananiravi has given the 👍 on the comment.

Please follow the contributing guidelines and create a new branch containing your changes. Commit your work, and submit a PR when ready for review.

Additionally, use the search in all files functionality in VS code, Rstudio, or any other text editor, and list all files the function is being called or used to be updated later.

teddyCodex commented 1 month ago

@jananiravi okay to go ahead with this?