2019 Fall To-do

[jananiravi]

• [x] Combine MS into a single doc and get started!
  • [x] Spell check and basic edits
  • [x] Advanced edits
• [x] Lit. survey
  • [x] 2011 to now
  • [x] BY CC: expts. + model
  • [x] Other recent Tyson-Novak, Skotheim, Cross, Di Talia, Ferrell models
  • [x] Size control: yeast
  • [ ] VS additions
  • [x] Incorporate these in the text!!!

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• [x] Figures
  • [x] Identify latest versions
  • [x] Identify 'editable' versions
  • [x] update
• [ ] Supp Mat
  • [x] Find latest supplementary figures
  • [x] Find latest tables incl.
  • [x] mutant simulations
  • [x] assumptions
  • [x] predictions
  • [x] equations, parameters, initial conditions
  • [x] mutant parameters
  • [x] Find supplementary text & methods
• [ ] Equations and model
  • [x] Install PET!
  • [x] Find latest PET file (2012 or 2013)
  • [x] Find the latest ODE model: equations & parameters
  • [x] VS?JZ?
  • [x] Alternate file formats?
  • [x] ODE? PET? Jigcell?
  • [ ] Matlab?
  • [ ] Python?

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• [x] Draft to VS, AK
• [ ] Draft to JJT
• [ ] Submit to bioRxiv & journals!

[jananiravi]

@KewalinSamart could you please export the SBML and ODE versions here? I can try editing the SBFa3–6 to SBFa2–5. thanks!

[KewalinSamart]

Done! = edited