Wrap pipeline

[JSAbrahams]

Relevant issues

Implements #17. Should also make it easier to test outputted python files, as stated in #32. A next step would also be to finally create a command line interface.

Summary

Wraps the pipeline, and allows us to specify mamba files which should be converted to python files. We can:

• Use the default location, meaning a python file is stored alongside the mamba input.
• We can specify an output directory.

In future, we should extend this functionality so we can recursively iterate over a directory, and output each file elsewhere. The directory structure of the output should then mirror the directory structure of the input.

Added Tests

Tests added to check that reading and writing files work and that the pipeline behaves.

Additional Context

...

[codecov[bot]]

Codecov Report

Merging #33 into master will increase coverage by 0.04%. The diff coverage is 80.95%.

@@            Coverage Diff             @@
##           master      #33      +/-   ##
==========================================
+ Coverage   62.56%   62.61%   +0.04%     
==========================================
  Files          26       26              
  Lines        2022     2014       -8     
==========================================
- Hits         1265     1261       -4     
+ Misses        757      753       -4

Impacted Files	Coverage Δ
src/lib.rs	0% <0%> (ø)	:arrow_up:
tests/util.rs	100% <100%> (+11.11%)	:arrow_up:
tests/smoke.rs	87.5% <50%> (ø)	:arrow_up:
src/core/mod.rs	51.87% <68.75%> (+0.4%)	:arrow_up:
tests/parser.rs	97.95% <92.3%> (ø)	:arrow_up:

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