GePI (GEne - Protein Interactions) is a web portal for quick and convenient access to gene - protein interaction mentions automatically extracted from the biomedical literature, i.e. PubMed and PubMed Central (Open Access Subset).
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Add taxIds to index documents and filter on those #185
Instead of filtering the input genes for the tax IDs. The approach wo filter on the documents is much simpler:
gene IDs are still mapped to their orthology aggregates, so the gene resolution step is always the same, but the documents can be filtered
GNP associates many (not all) family mentions with taxIds, so we can apply taxonomy filtering to families which would not work on the concept level at all
GO terms are also not taxonomy specific but in this way we can still only retrieve the genes with the filter taxonomy IDs
Instead of filtering the input genes for the tax IDs. The approach wo filter on the documents is much simpler: