Mapping of C9J6L7_HUMAN (and many other UP mnemonics) fails

JULIELab / gepi

GePI (GEne - Protein Interactions) is a web portal for quick and convenient access to gene - protein interaction mentions automatically extracted from the biomedical literature, i.e. PubMed and PubMed Central (Open Access Subset).

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Mapping of C9J6L7_HUMAN (and many other UP mnemonics) fails #281

Open khituras opened 1 month ago

khituras commented 1 month ago

Investigate why C9J6L7_HUMAN is not properly recognized. Its UniProt record shows a connection to HGNC:12340 which in turn maps to gene:7227. Is this missing from the gene <-> uniprot mapping table we use?

khituras commented 1 month ago

It appears that the gene <-> up mapping file (ftp://ftp.pir.georgetown.edu/databases/idmapping/idmapping.tb.gz) we used did not contain the gene ID for this UP record. The file seems to be rather incomplete in this sense which is quite unfortunate for GePI's purposes.