"freePSI build -g" is not suitable for genomes with fragmented assembly

JY-Zhou / FreePSI

An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome

GNU General Public License v3.0

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"freePSI build -g" is not suitable for genomes with fragmented assembly #6

Open pengchy opened 4 years ago

pengchy commented 4 years ago

Hi,

I am working on some species with fragmented genome assembly. There will be 10 k ~ 1 million separated files in the genome directory for the "-g" parameter. Could you please modify the code to accept one single genome file containing all the scaffolds?

This modification will expand the application for your software.

Thank you! Pengcheng Yang