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JackieHanLab / TOSICA

Transformer for One-Stop Interpretable Cell-type Annotation
MIT License
126 stars 24 forks source link

TOSICA install problem #12

Open wang-qf opened 1 year ago

wang-qf commented 1 year ago

hi, i try to install TOSICA much times in different servers, never sucess : ( could you provide the complete lib .ymal, i noticed the TOSICA.ymal doesn't include scanpy. hope you provide a complete ymal file for one stop : )

JiaweiChenGo commented 1 year ago

Thank you for your interest in TOSICA. I recently reviewed the Installation step and it appears to be functioning correctly:

conda create -n TOSICA python=3.8 scanpy
conda activate TOSICA
conda install pytorch=1.7.1 torchvision=0.8.2 torchaudio=0.7.2 cudatoolkit=10.1 -c pytorch
pip install git+https://github.com/JackieHanLab/TOSICA.git

Additionally, I appreciate you pointing out the mistake in the YAML file, and we have updated the TOSICA.yaml file.

Providing more details can help us better understand the issues you are facing during the installation process.

Let me know if there were further problems.