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JackieHanLab / TOSICA

Transformer for One-Stop Interpretable Cell-type Annotation
MIT License
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Problem with TOSICA metrics comparing #14

Closed WhatMelonGua closed 1 month ago

WhatMelonGua commented 1 year ago

Hello! TOSICA is an interesting and great tools when annotation and integration.

here I have some problems comparing TOSICA result. I want to compare TOSICA result with other methods (in scIB) but when I try to use sciB:

  1. I can't completely bulid the environment of scIB, 2. the scIB pipeline code doesn't clearly. I noticed you plot a nice fig in TOSICA fig5. so if you like share your scIB's requirement.ymal or requirement.txt file, and your run successful code, I would greatly appreciate it!
JiaweiChenGo commented 10 months ago

Thanks for you interest! If you have problems applying scIB, you can ask them for help. https://github.com/theislab/scib.